HsaEX0046921 @ hg19
Exon Skipping
Gene
ENSG00000112511 | PHF1
Description
PHD finger protein 1 [Source:HGNC Symbol;Acc:8919]
Coordinates
chr6:33378176-33380199:+
Coord C1 exon
chr6:33378176-33378282
Coord A exon
chr6:33378943-33378992
Coord C2 exon
chr6:33380025-33380199
Length
50 bp
Sequences
Splice sites
3' ss Seq
CGCGCGGGGGACTCGCCTAGGTC
3' ss Score
0.47
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
AAGCACGGGGCGGGACGTCCACGGGAAGCGGCGCGCACGCCCGCCGACTCCCTCGCGCCAACCGCCGACGGCCGCCGCCCGGTGAAGGAGGGGCTCAGTCCTCCCAG
Seq A exon
GTCTCCTACGTCTGCCCCTGCCCGGCTCCCGGCGGCCCCAGCTGTCACCG
Seq C2 exon
GCCCCCCCAGGATGCAATGGCGCAGCCCCCCCGGCTGAGCCGCTCTGGTGCCTCCTCACTTTGGGACCCAGCTTCTCCTGCTCCCACCTCTGGCCCCAGGCCTCGGCTTTGGGAGGGTCAAGATGTGCTGGCCAGATGGACTGATGGGCTGCTATACTTGGGTACCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112511-'0-7,'0-6,2-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.434
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF150571=DUF4537=PU(33.3=35.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGGGCTCAGTCCTC
R:
CATCTTGACCCTCCCAAAGCC
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)