HsaEX0047393 @ hg38
Exon Skipping
Gene
ENSG00000135845 | PIGC
Description
phosphatidylinositol glycan anchor biosynthesis class C [Source:HGNC Symbol;Acc:HGNC:8960]
Coordinates
chr1:172370189-172415376:-
Coord C1 exon
chr1:172415294-172415376
Coord A exon
chr1:172399819-172399916
Coord C2 exon
chr1:172370189-172370311
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTAACAACAGCAA
3' ss Score
7.13
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGATCAACCTGGATGCCTTCCTTCACAATAATCTCATGGAGGTAATTTAAAGAATCCCTTTTTTGGAGAGTCAGAGAGAAAAG
Seq A exon
CAAAAAAAAAGAGCATGAGGAATTTGAAGACTGAGAGATGAGTTGTGTAGCACCAACATTTTCTTTCTGCCTGACCTTCATACCTGATGAATTAAAAG
Seq C2 exon
GTGATGATACAGTGTTTTGGTGTCCCAAAGAAATAAAATCCAGCACTGTCCAATTGAAGTATAATGCAAGCCACATTTCTAGTAGCCATATTTTAAAAAGTAACAATAAAGTGTTGAAATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135845_MULTIEX1-3/6=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGGATGCCTTCCTTCA
R:
TGGCTACTAGAAATGTGGCTTGC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development