HsaEX0047459 @ hg19
Exon Skipping
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:14135]
Coordinates
chr16:630858-632309:+
Coord C1 exon
chr16:630858-630972
Coord A exon
chr16:631199-631341
Coord C2 exon
chr16:632248-632309
Length
143 bp
Sequences
Splice sites
3' ss Seq
GAGACTCACCTGCCGCGCAGGTT
3' ss Score
4.38
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CTCCGGCTCCTGGTGGTCGCCGTGCAGGGCCTGATCCATCTGCTCGTGGACCTCATCAACTCCCTGCCGCTGTACTCACTGGGTCTTCGGCTCTGCCGGCCCTACAGGCTGGCGG
Seq A exon
GTTCAGAACCCTGGAGACCTGAGGCCACAGGCCTTTGTTCTTCTGCCTTGGGATTTTCTGGGCTTGGGAGTCTGAACTGCAGGCCAGGGGCCAAGCGCGGCAAAGTCAGAGGCACTAGGAGCCAGCAGGGCGGCCACCATCCA
Seq C2 exon
CTGGCGTGAAGTTCCGTGTCCTCCGGCACGAGGCCGGCAGGCCCCTCCGCCTCCTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541_MULTIEX1-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.060
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(35.4=43.6)
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGGCTCCTGGTGGTC
R:
CTGCATCAGGAGGCGGAGG
Band lengths:
177-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)