HsaEX0047518 @ hg19
Exon Skipping
Gene
ENSG00000133056 | PIK3C2B
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:HGNC Symbol;Acc:8972]
Coordinates
chr1:204437998-204463852:-
Coord C1 exon
chr1:204463484-204463852
Coord A exon
chr1:204458944-204459059
Coord C2 exon
chr1:204437998-204439014
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTCTCTCATACTAGATG
3' ss Score
10.05
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGTGCGCCGGGTGTCCGGGAGATGGCTTCCCCTCTCTCGCCCGCTGCTGCCGCTATTGTCTCACCCGGGGTGGCCTGACTCTGCGAGCTCGCGCACGCTCTCGGCGGAGAGCACCCCTCCCCACCCCCACAAGCTGGTCCTTGCGCCCTTTGCTGCCTCTCCCTCTGCCCCTTGGAGCCTAGGGTCTGTGCGGAGCCTGGAGAGGGGAGCGGCCCGGGAGCAGGCGGCGTGCGGCCGGCCAGCTCCTCTCGCGCTGGTGCAAGAGGCGCCTGGAGCCGCAGAGCGAGCCCGGGAGGCGCGGAGCGAGCAGCCCACGTCGCCAGGCACAAGACACGTCGGATGTTGCAGCAGAGCCAGCAGCTAGCGCAG
Seq A exon
ATGGCGTCCTTTGCAGCAAACCGTAAGTTATAAGGATGAGGGAAGAAGAGTAGAGGGCCAAAAGGATTCCATTTTGAGGAAAAACTACAGTTTGCCTTGCCAGGTAGAAGAATCAG
Seq C2 exon
GCGCCCAGACACCATGTCACAACCCTCCAGAACTGACGTTGGCAGGAAGTAGAGACTTTGTTGCCTGTGTCCCCCATCCTCACCATGTCTTCGACTCAGGGCAATGGGGAACACTGGAAGTCCCTGGAGTCAGTGGGCATCAGCCGCAAAGAGCTAGCGATGGCCGAAGCCCTGCAGATGGAGTATGATGCCCTGTCCCGGCTCCGGCATGACAAGGAGGAGAACAGAGCCAAGCAGAACGCAGACCCCTCTCTCATCAGCTGGGATGAGCCTGGGGTAGACTTTTACAGCAAGCCAGCAGGAAGGCGGACCGACCTCAAGCTGTTACGCGGTCTCTCTGGCTCTGATCCTACCCTTAACTACAACTCACTCTCCCCACAGGAAGGGCCGCCCAACCACTCTACCTCCCAAGGGCCACAGCCTGGCTCAGATCCCTGGCCCAAAGGCTCCCTGTCTGGAGACTATCTCTACATTTTTGATGGTTCAGATGGGGGAGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056-'0-3,'0-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.814
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACACGTCGGATGTTGCA
R:
GGGACAGGGCATCATACTCCA
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)