HsaEX0047984 @ hg19
Exon Skipping
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:9042]
Coordinates
chr2:160843667-160862332:-
Coord C1 exon
chr2:160862163-160862332
Coord A exon
chr2:160861207-160861377
Coord C2 exon
chr2:160843667-160843869
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTCTACTAGTTCATCCTCAGGTG
3' ss Score
3.65
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTTGAACAGGCTTTTATTACCAGTTTGATCAGTAGTGTGGTAAAAATGAAGGACAGTTATTTTTGGATAGCTCTTCAGGACCAAAATGATACGGGAGAATACACTTGGAAGCCAGTAGGGCAGAAACCCGAGCCGGTGCAGTACACACACTGGAACACACACCAGCCGC
Seq A exon
GTGTTCAGCTCTGAATCCCAAGGCATGAAACTGTGCCAGGTTGGTCAGTACCAGAGAAGCTGATGTCTTCCGCCACAGCCTACACTAGAACCAGTCTCTGTGGAACAAGCTTCAGGCCCTTGTATTAAGCTGAGGTTGACAGCCTAGACCCAACAGCCCTTCTACTTCAGG
Seq C2 exon
GCTACAGTGGTGGCTGTGTTGCCATGCGAGGAAGGCATCCACTTGGTCGCTGGGAAGTGAAGCACTGTCGGCACTTTAAGGCAATGTCCTTGTGCAAGCAGCCAGTTGAAAATCAGGAAAAAGCAGAGTATGAAGAGAGATGGCCCTTTCACCCCTGCTATTTGGACTGGGAGTCAGAGCCTGGTCTGGCCAGTTGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246-'14-17,'14-16,15-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(57.6=100)
A:
PF0005916=Lectin_C=PD(2.9=40.0)
C2:
PF0005916=Lectin_C=PD(33.3=48.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGAATACACTTGGAAGCC
R:
CCAGTCCAAATAGCAGGGGTG
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)