HsaEX0048735 @ hg19
Exon Skipping
Gene
ENSG00000032444 | PNPLA6
Description
patatin-like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:16268]
Coordinates
chr19:7599054-7599788:+
Coord C1 exon
chr19:7599054-7599125
Coord A exon
chr19:7599265-7599332
Coord C2 exon
chr19:7599636-7599788
Length
68 bp
Sequences
Splice sites
3' ss Seq
TACCCCCCACGTCTCGGCAGGTG
3' ss Score
8.68
5' ss Seq
CAAGTAACG
5' ss Score
3.7
Exon sequences
Seq C1 exon
GGGCCGTGCCTGCGGAGCCGGGCGGAACGCTAGCGGTGTTGGCGCGGAGTGGACCCCGGCTGCGGCCCCTGG
Seq A exon
GTGTTTCCACACCGGTAGCCAGCTGTGCCCTGAGGTGGAAGAGGACCGGCCACCCAGGAATTTTCCAA
Seq C2 exon
CAATGGCGCCACCATCGGTCCCGGAGTCCCAGTGATGCTCTGTGCCATAGAGCCCCCATAACTTCACTACTACGTGATAGTAAATCCCCGGCAAAAACCAGCAGCGCCTTGCAAGCCCACGCCACCCCAAGCATCCCAGGACTCTTCTGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000032444-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGCGCGGAGTGGAC
R:
GAAGAGTCCTGGGATGCTTGG
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)