HsaEX0048741 @ hg19
Exon Skipping
Gene
ENSG00000032444 | PNPLA6
Description
patatin-like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:16268]
Coordinates
chr19:7599636-7600463:+
Coord C1 exon
chr19:7599636-7599788
Coord A exon
chr19:7600013-7600099
Coord C2 exon
chr19:7600395-7600463
Length
87 bp
Sequences
Splice sites
3' ss Seq
AGGCTTGATCAACCCTGCAGAGG
3' ss Score
2.64
5' ss Seq
CAGGTCGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
CAATGGCGCCACCATCGGTCCCGGAGTCCCAGTGATGCTCTGTGCCATAGAGCCCCCATAACTTCACTACTACGTGATAGTAAATCCCCGGCAAAAACCAGCAGCGCCTTGCAAGCCCACGCCACCCCAAGCATCCCAGGACTCTTCTGAAAC
Seq A exon
AGGGCAGTGACCCGGGAGGAAGTCACCAGGTGCAGAGGACCGTGCCCTGTGGGGACCTGCCTGCAGGCTGCTGACAGTGGGTACCAG
Seq C2 exon
GACTCCGGGCTACCAGATCGGCCGTCCAGCTGGAATCAACCGATGGAGGCTCCGCTGCAAACTGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000032444_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.156
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF073326=DUF1469=PU(11.8=66.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCATAGAGCCCCCATA
R:
GGAGCCTCCATCGGTTGATTC
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)