HsaEX0049137 @ hg38
Exon Skipping
Gene
ENSG00000196313 | POM121
Description
POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]
Coordinates
chr7:72890933-72911615:+
Coord C1 exon
chr7:72890933-72891110
Coord A exon
chr7:72901036-72901128
Coord C2 exon
chr7:72911515-72911615
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCCTTTATTGCCCAGGTCAGACT
3' ss Score
-0.07
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CTTATGAGGTGGCAACATCTTGTACTTCGGAGATCTGAAGCCGAGCAACTTGCCCAAGTCCTTCTTCTTTTCCCATTAACAAGATATGATATCACCAAGCCAAACGTCATCATTAAGTTGGAGCAGGGAGAGGAGCTGTGGATAACGGGAGGTGAATTTCCATGTCAACATAGTCCAG
Seq A exon
ACTGCAGTGGTGTAATCATAGCTCATTGAAGCCTCAAACTCCTGAGCTCCAGGAATCCTCCCACCACAGTCTCTCAAATACTTGGGACTACAG
Seq C2 exon
GCAGTAAAACCCCATCTCCAGCCCAAAGCACCTTGCTAAAGAGCCTGCACCGCAGTCACTGTGCCTTTGCGCTCTGGCTCGTGCGACCTCTCCAGATCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196313-'2-12,'2-11,3-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCTGAAGCCGAGCAAC
R:
TGGGCTGGAGATGGGGTTTTA
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development