HsaEX0049138 @ hg19
Exon Skipping
Gene
ENSG00000196313 | POM121
Description
POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:19702]
Coordinates
chr7:72361472-72397015:+
Coord C1 exon
chr7:72361472-72361649
Coord A exon
chr7:72384302-72384365
Coord C2 exon
chr7:72396800-72397015
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCATTCTCCTTTTAGCCC
3' ss Score
10.81
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTTATGAGGTGGCAACATCTTGTACTTCGGAGATCTGAAGCCGAGCAACTTGCCCAAGTCCTTCTTCTTTTCCCATTAACAAGATATGATATCACCAAGCCAAACGTCATCATTAAGTTGGAGCAGGGAGAGGAGCTGTGGATAACGGGAGGTGAATTTCCATGTCAACATAGTCCAG
Seq A exon
CCCTTCACATCCTCAGCCGAAGATCTCACTTCCTCCCAGAGGCCTTTGCTGACTGACCCCTCAG
Seq C2 exon
GGATTGTGGGACTTTACCAAATCGGTTTGTAATAACACCTAGAAGACGCTATCCGATCCATCAGGCCCAGTATTCCTGTCTGGGGGTACTTCCCACCGTGTGCTGGAATGGTTATCACAAGAAGGCTGTGCTGTCCCCTCGCAACTCCAGGATGGTGTGTAGCCCAGTGACTGTGAGGATCGCCCCTCCTGACAGAAGATTTTCGCGTTCTGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196313_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.508
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGGAGCAGGGAGAGGAG
R:
TGGGCCTGATGGATCGGATAG
Band lengths:
133-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)