HsaEX0049140 @ hg19
Exon Skipping
Gene
ENSG00000135213 | POM121C
Description
POM121 transmembrane nucleoporin C [Source:HGNC Symbol;Acc:34005]
Coordinates
chr7:75070710-75104148:-
Coord C1 exon
chr7:75103970-75104148
Coord A exon
chr7:75095265-75095362
Coord C2 exon
chr7:75070710-75070925
Length
98 bp
Sequences
Splice sites
3' ss Seq
CATCTCCCTTTGTTGCCCAGGTC
3' ss Score
7.89
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CTTATGAGGTGGCAACATCTTGTACTTCGGAGATTCTGAAGCCGAGCAACTTGCCCAAGTCCTTCTTCTTTTCCCATTAACAAGATATGATATCACCAAGCCAAACGTCATCATTAAGTTGGAGCAGGGAGAGGAGCTGTGGATAACGGGAGGTGAATTTCCATGTCAACATAGTCCTG
Seq A exon
GTCAGACTGCAGTGGTGCAATCACAGCTCATTGAAGCCTCAAACTCCTGGGCTCCAGGAATCCTCCCACCACAGTCTCTCAAATACTTGGGACTACAG
Seq C2 exon
GGATCGTGGGACTTTACCAGATCGGTTTGTAATAACACCTCGAAGACGCTATCCGATCCATCAGACCCAGTATTCCTGTCCGGGGGTACTTCCCACAGTGTGCTGGAATGGTTATCACAAGAAGGCTGTGCTGTCCCCTCGCAACTCCAGGATGGTGTGTAGCCCAGTGACTGTGAGGATCGCCCCTCCTGACAGAAGATTTTCACGTTCTGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135213_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.528
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGGAGCAGGGAGAGGAG
R:
TCCAGCACACTGTGGGAAGTA
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)