HsaEX0049174 @ hg19
Exon Skipping
Gene
ENSG00000146707 | POMZP3
Description
POM121 and ZP3 fusion [Source:HGNC Symbol;Acc:9203]
Coordinates
chr7:76247500-76255000:-
Coord C1 exon
chr7:76254839-76255000
Coord A exon
chr7:76247814-76247932
Coord C2 exon
chr7:76247500-76247617
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTCTTTTTTTCAGACC
3' ss Score
12.11
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
ACCAGAGCAGATAATCAGCTCAACACTGTCCTCACCATCAAGTAATGCCCCAGACCCATGTGCAAAGGAGACTGTACTGAGTGCCCTCAAAGAGAAGAAGAAGAAAAGGACAGTGGAGGAAGAAGACCAAATATTCCTTGATGGCCAGGAAAATAAAAGAAG
Seq A exon
ACCGAGTCTCAGTCTGTCACCCAGGCTAGTGCAATGGTGCAATTTTGGCTCACTACACCCTCTGCCTCCCAGATTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGGTGGATTACAG
Seq C2 exon
CTGTCTTGTCGACGGTCTCACTGATGCCTCTTCTGCATTCAAAGTTCCTCGACCCGGGCCAGATACACTCCAGTTCACAGTGGATGTCTTCCACTTTGCTAATGACTCCAGAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146707-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF152291=POM121=PU(54.3=45.5),PF0010018=Zona_pellucida=PU(4.3=5.5)
A:
PF152291=POM121=PD(23.5=19.5),PF139001=GVQW=PU(94.3=80.5)
C2:
PF152291=POM121=PD(21.2=4.8),PF139001=GVQW=WD(100=31.7),PF0010018=Zona_pellucida=PU(59.1=26.9)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAACACTGTCCTCACCA
R:
TCTGGAGTCATTAGCAAAGTGGA
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)