HsaEX0049708 @ hg38
Exon Skipping
Gene
ENSG00000119383 | PTPA
Description
protein phosphatase 2 phosphatase activator [Source:HGNC Symbol;Acc:HGNC:9308]
Coordinates
chr9:129123052-129129110:+
Coord C1 exon
chr9:129123052-129123138
Coord A exon
chr9:129127964-129128068
Coord C2 exon
chr9:129128985-129129110
Length
105 bp
Sequences
Splice sites
3' ss Seq
AAGATTATGTTTATATGTAGATG
3' ss Score
4.18
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GCATACGCTGACTACATCGGATTCATCCTTACCCTCAACGAAGGTGTGAAGGGGAAGAAGCTGACCTTCGAGTACAGAGTCTCCGAG
Seq A exon
ATGTGGAATGAGGTTCATGAGGAAAAGGAGCAGGCTGCAAAGCAGAGTGTGTCCTGCGATGAATGCATACCATTACCCCGCGCCGGGCACTGTGCACCTTCGGAG
Seq C2 exon
GCCATTGAGAAACTAGTCGCTCTTCTCAACACGCTGGACAGGTGGATTGATGAGACTCCTCCAGTGGACCAGCCCTCTCGGTTTGGGAATAAGGCATACAGGACCTGGTATGCCAAACTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119383_MULTIEX1-3/8=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.009
Domain overlap (PFAM):
C1:
PF0309510=PTPA=FE(52.8=100),PF0309510=PTPA=PU(3.7=27.6)
A:
PF0309510=PTPA=PU(25.2=94.3)
C2:
PF0309510=PTPA=FE(12.3=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATACGCTGACTACATCGGA
R:
TGGCATACCAGGTCCTGTATG
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development