HsaEX0050819 @ hg19
Exon Skipping
Gene
ENSG00000095303 | PTGS1
Description
prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) [Source:HGNC Symbol;Acc:9604]
Coordinates
chr9:125133465-125140294:+
Coord C1 exon
chr9:125133465-125133551
Coord A exon
chr9:125133892-125134113
Coord C2 exon
chr9:125140178-125140294
Length
222 bp
Sequences
Splice sites
3' ss Seq
AACCCCGCTGTTTCCTATAGGGG
3' ss Score
8.13
5' ss Seq
TCAGTAGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GGAGTCTCTTGCTCTGGTTCTTGCTGTTCCTGCTCCTGCTCCCGCCGCTCCCCGTCCTGCTCGCGGACCCAGGGGCGCCCACGCCAG
Seq A exon
GGGCCTCTTTGGGAGGAAGCCGCAGGCACCAAGGGAAATGAGTTCCCTTTCTCCAGCCTCTAACCGTCTGGGAACCCATCCTGATTCCCATTGCCAGTGGAGAAGGTCTCCCCTGGTGAAGACTTCGGGAGAACATGGGAGATGGAAATACATTTAGGAGCCGGGATGCTTCATCTGGGGTTTAAGAGATCCCCATTGAGCAAATGAGGAAACCGAGGCTCA
Seq C2 exon
TGAATCCCTGTTGTTACTATCCATGCCAGCACCAGGGCATCTGTGTCCGCTTCGGCCTTGACCGCTACCAGTGTGACTGCACCCGCACGGGCTATTCCGGCCCCAACTGCACCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095303_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.028 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=87.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCTCTTGCTCTGGTTCT
R:
GGATGGTGCAGTTGGGGC
Band lengths:
204-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)