HsaEX0051436 @ hg19
Exon Skipping
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:23517]
Coordinates
chr10:100173705-100174941:-
Coord C1 exon
chr10:100174766-100174941
Coord A exon
chr10:100174489-100174591
Coord C2 exon
chr10:100173705-100174052
Length
103 bp
Sequences
Splice sites
3' ss Seq
AAAGCCCTTCCATCTGGCAGGCA
3' ss Score
4.57
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
CCAATCGCTAGCAAACTCCCTGCCTAGCAAGGCCCAGCCTGGGGCAGAAATGGCTGCAAGTGGCCGAGGTCTCTGCAAGGCTGTGGCCGCCTCTCCCTTCCCGGCGTGGAGACGAGATAACACGGAAGCCAGGGGAGGTCTGAAGCCTGAGTATGATGCGGTGGTGATAGGAGCAG
Seq A exon
GCAGGCACCTGGGATTCCGGTGCTGGCTCTGCTGTGTGGCCTGGGGCAAATGCTTGCCTTCTCTGGGCTTGGATCTTCCCATGGAGAATGACAGGAAGACTAG
Seq C2 exon
AGGGCCCCAAATGCATGATTGCCAACTGGGTCTATACAGAGATAATGACGGGACCGAAAGCAGACGGCACTCAACATGCAGCTTTGAGGGCATGCCTTCATTTTCATATGTACTAGAGCAGTTGCGAGCTGGTAGATACTCAACACTCACCTCTCCAGGGAAAAATGTGTGATGTATGTGTGTGTGTACATGTATATATATGTATATATACACACATATATGTGTATATATATGTATATGTGTTACGTACATATATATACACATATACACATGCTTATTTTAAATATTGAAATAAAAGATACACTGCACACAATTTTACAAATAAAGATACAATACTCTCAATTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.114 C2=NA
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.2=9.3)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACTCCCTGCCTAGCAAGG
R:
CAAAGCTGCATGTTGAGTGCC
Band lengths:
251-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)