HsaEX0051443 @ hg19
Exon Skipping
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:23517]
Coordinates
chr10:100167661-100170715:-
Coord C1 exon
chr10:100170696-100170715
Coord A exon
chr10:100168212-100168341
Coord C2 exon
chr10:100167661-100167754
Length
130 bp
Sequences
Splice sites
3' ss Seq
GAGTACATTCTCTGTGCCAGGGA
3' ss Score
5.09
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GACACAACGGACTGGTGGCT
Seq A exon
GGACCACTTAAACCCTGTCTAGGAACCAGCTCAGTTAATCTTCACAGCAGCCTTATGAAGTGGGTAAAGCCGGGACTACTTTCATCAGCCCCACTTTTGCATGTGAACAAACTGAGGCCAGACGGATCAG
Seq C2 exon
GCAGCGTACCTGCAGAGACTGGGGGTGAACACCGCCGTCTTCGAGAGGCGCCATGTGATCGGGGGTGCAGCTGTCACTGAGGAGATCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943-'5-6,'5-4,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.159 C2=0.106
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(9.4=100)
A:
NO
C2:
PF134501=NAD_binding_8=FE(48.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAACGGACTGGTGGC
R:
CTGGGATGATCTCCTCAGTGACA
Band lengths:
114-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)