HsaEX0051793 @ hg19
Exon Skipping
Gene
ENSG00000152061 | RABGAP1L
Description
RAB GTPase activating protein 1-like [Source:HGNC Symbol;Acc:24663]
Coordinates
chr1:174128548-174188322:+
Coord C1 exon
chr1:174128548-174128795
Coord A exon
chr1:174162736-174162822
Coord C2 exon
chr1:174188263-174188322
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTCTGACCTACTCATTTCAGGAA
3' ss Score
8.22
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GGCCTGGACGAGCGCGCTTCCGACCCGCCGCCACCGCCTCCTCCCCTCCTTCTCGGCCCGCCCCCTCCCTCGCCTCTTCCTGCCAGGCGGCCCTTCTCCCCTCCCCTCTCAGTTCCCTCCGCCCTCCTCGGGCTCCAGCGGTGGCGGAGCGAACGGGACCGGCCCGGCTTCAGAGCGCGAGGTGGAGGGTGGAACGCGGGCGCCTGAAGGAGTTGTTGTCTCGGCAGCGCCCGCGGAGACGTGAAGAG
Seq A exon
GAAACAAAAGACTACAATTGCCTTTATGCTGATATGCCCTTATATTGAAGACTTGACCATATATAGGAACATTAAACAGAATGCCAG
Seq C2 exon
GTGGTTGTGGGAAGAGAAGTTTGCAGAACTGAAATGGAGGTCAGAGCTTCATTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152061-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.806
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF080307=NAD_binding_6=PU(56.4=95.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCCCTCCCCTCTCAGTT
R:
GCAAACTTCTCTTCCCACAACC
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)