HsaEX0051801 @ hg19
Exon Skipping
Gene
ENSG00000152061 | RABGAP1L
Description
RAB GTPase activating protein 1-like [Source:HGNC Symbol;Acc:24663]
Coordinates
chr1:174721451-174781098:+
Coord C1 exon
chr1:174721451-174721492
Coord A exon
chr1:174769070-174769638
Coord C2 exon
chr1:174780970-174781098
Length
569 bp
Sequences
Splice sites
3' ss Seq
GCACACACACCCTTTCTCGCACA
3' ss Score
-12.33
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
GGTTTGAACATAATCTTTCATGTAGCTTTGGCTCTCCTAAAG
Seq A exon
ACACACACACACACACACACACACACACACACACACACACACACACACTCTCACACATTCTCACATGCTAGACCCTTCTAAGCAGCTTGTCCGTTTTTACACATGTATCTGAACTCTCCTGCATCACTCTTGGCCATTTTCTCGCATTCGATTGCTTTTGCCGTTTTTTATTTAGATCAGTACTTGATTTCATTTTCATTTTCCAGTCTACTTTGGGGTTCTCGCAGTGGATAATTTAGCCAAAATGTTTTTCTTGTGGAGACATTAGCTGACAATTCCCACCACAGACTGGCTTGTACGTCCTCCCAGGGAGACCTAAACCTGGCTCCCCTCCCACCGCAGTTCTTAATATTGTGGATAAGAGATCCATCTTTCTCATTCTGGATACCTACTTAGTGCTCATGGAAGAAGGGGTGCCCTGCCCAGCCCCAGCTGCTAAGCTCACACCTCCTGTCAAAAAGTCCCAGGACATGCACGACGAGAGGAGCAAGCTGGTGAATGAGTATGCGTGTCGAGTGCTGGAACTTCTGGGGATGGGGCATCGTCTGTTTGTGCCTCGGCTTCTGGCG
Seq C2 exon
ACCTCAAAGGAAGACCTTCTGCAGGCTGATTTTGAAGGTGCTTTAAAGTTCTTTAGAGTTCAGCTTCCAAAGAGATACAGGGCAGAGGAAAATGCAAGAAGACTGATGGAGCAGGCTTGCAATATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152061-'36-40,'36-37,37-40
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.354 C2=0.009
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(25.5=100)
A:
NO
C2:
PF0056613=RabGAP-TBC=PD(11.8=14.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)