HsaEX0051853 @ hg38
Exon Skipping
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr12:50016631-50021177:-
Coord C1 exon
chr12:50021062-50021177
Coord A exon
chr12:50019744-50019806
Coord C2 exon
chr12:50016631-50016719
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTTTCACTTTATAGATG
3' ss Score
9.6
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
TGTATCTCCTAGCTATGGACTAAATAATACATGGGGGGAAATAAACAAGTATTCATGAGGGTGAAAATGTGACCCAGCAGGAAAATTACAACTATTTTCAATTGACGTTGAATAGG
Seq A exon
ATGAGTCATGGAATTTAAGTGATTTACTGAAGATTATACTACTGGTAGATAGAAGAGCTAAAG
Seq C2 exon
AAAGATGGATACTATGATGCTGAATGTGCGGAATCTGTTTGAGCAGCTTGTGCGCCGGGTGGAGATTCTCAGTGAAGGAAATGAAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800_MULTIEX2-3/8=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF111803=DUF2968=PU(23.4=89.7),PF078886=CALCOCO1=PU(16.0=69.0),PF140731=Cep57_CLD=PU(15.3=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAAAATGTGACCCAGCA
R:
TCACTGAGAATCTCCACCCGG
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development