HsaEX0052075 @ hg19
Exon Skipping
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135979835-135981403:-
Coord C1 exon
chr9:135981319-135981403
Coord A exon
chr9:135980055-135980171
Coord C2 exon
chr9:135979835-135979938
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGTCTCGCTCTGTCTCCCAGGCT
3' ss Score
6.95
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGACAGTTTCCGGATCTTTCAGAAGCTGTCAGAGATCTTCTCAGATGAGAACAACTACTCATTGAGCCGGGAGCTGCTCATCAAG
Seq A exon
GCTGGAGTGCAATGGCGTGATCTCGGCTCACTGCAATCCCCACCTCCTGGGTTCAAGGGATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGATTATAGGTGTGCACCACCAACCCAG
Seq C2 exon
GCGTGAGCCACCGCACCATGCAGCAGGCGGAGTTCTCATCCGCACTTTCCAGAGGGGGAGGCAGGCTCAGGAAGGCCAGGCCACCGGCCCAGGACCCCACACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-'10-20,'10-18,12-20
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.0=100),PF139001=GVQW=PU(4.7=6.9)
A:
PF0061714=RasGEF=FE(15.0=100),PF139001=GVQW=FE(88.4=100)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTTTCCGGATCTTTCAGA
R:
TAGTGTGGGGTCCTGGGC
Band lengths:
189-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)