HsaEX0052522 @ hg19
Exon Skipping
Gene
ENSG00000146587 | RBAK
Description
RB-associated KRAB zinc finger [Source:HGNC Symbol;Acc:17680]
Coordinates
chr7:5055769-5087722:+
Coord C1 exon
chr7:5055769-5055854
Coord A exon
chr7:5085886-5086027
Coord C2 exon
chr7:5087664-5087722
Length
142 bp
Sequences
Splice sites
3' ss Seq
CGCCTGGATTTGCCCCTTAGGCC
3' ss Score
7.22
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
ACGTGCCTGCTTCCCCTTTGCCTTCTGCATGATTGTCAGTTTCCTGAGGCCTCCCCAGCCATGCTTCCTGTACAGCCTGCAGAACT
Seq A exon
GCCCGGCCCGGGCCCCTCGGGAGCAGAACAACCTTAGTGAGGTGGACAGGAGGGGACCTCGCGAGCAGACGCGCGCCAGCGACAGCAGCCCCGCCCCGGCCTCTCGGGAGCCGTGGGGCAGAGGCTGCGGAGCCCCAGAAGG
Seq C2 exon
GTCTACCAGCCACAGTCTCTGCACGTTTCCAAGAGCAGCAGAAAATGAACACATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146587-'2-7,'2-5,4-7
Average complexity
C1
Mappability confidence:
100%=100=80%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCCCCTTTGCCTTCTG
R:
TGCAATGTGTTCATTTTCTGCTGC
Band lengths:
138-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)