Special

HsaEX0052775 @ hg19

Exon Skipping

Gene
Description
RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:9907]
Coordinates
chr2:161223727-161349890:-
Coord C1 exon
chr2:161349800-161349890
Coord A exon
chr2:161235001-161235124
Coord C2 exon
chr2:161223727-161223902
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTTTATAGATA
3' ss Score
11.07
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
GCTCCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAGCAGATGTACCCTCAGTACGCCACCTACTATTACCCCCAGTATCTGCAAGCCAAG
Seq A exon
ATAGAGTCTTACTTTGGTGCCCAGGCTGAAGAGCAGAGCAGTGGCATGATCTCAGCTCAGTGCAGCCTTGACCTCCCGGCTCAAGTGATCGTCCCACCTCAGCTTCCCCAGTAGTTGGACACAG
Seq C2 exon
CAGTCTCTGGTCCCAGCCCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTCAGCAAAACGAACCTCTATATCCGAGGACTGCCTCCCCACACCACCGACCAGGACCTGGTGAAGCTCTGTCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250-'0-8,'0-7,7-8
Average complexity
S
Mappability confidence:
91%=100=100%
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.579
Domain overlap (PFAM):

C1:
PF082036=RNA_polI_A14=PU(13.8=32.0)
A:
NO
C2:
PF062597=Abhydrolase_8=PU(43.0=96.1),PF0007617=RRM_1=PU(29.4=39.2)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCATGGGCAAAGTGTGGA
R:
GGTTGACAGAGCTTCACCAGG
Band lengths:
256-380
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development