HsaEX0053316 @ hg38
Exon Skipping
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator like 2 [Source:HGNC Symbol;Acc:HGNC:9769]
Coordinates
chr6:33297032-33298521:-
Coord C1 exon
chr6:33298455-33298521
Coord A exon
chr6:33297214-33297343
Coord C2 exon
chr6:33297032-33297115
Length
130 bp
Sequences
Splice sites
3' ss Seq
CATCCACGCCTCCACTGCAGCCC
3' ss Score
6.8
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGGTGGGGGCCCAGGTGGCCTGGTCGTGGGCGGGGGGCAGGAGGAAGAGGAGGAGGAAGAAGAAGAG
Seq A exon
CCCCTTCGACTCCACCGGGGCCCTGAGGCGGCTGGGGTGGGGCTGTCTGGGCCCCAGTGGGGGAGACCTGGGGTCACCAGCTCCCCCAACCCTTCCTCGCACTCGCTGGTACTATGCCCTGCCACCACAG
Seq C2 exon
GCCCCTGTGTCCGTCTGGGATGAGGAGGAGGATGGTGCCGTGTTTACCGTCACAAGCCGCCAATATCGACCTCTTGATCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441-'1-10,'1-9,8-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=0.932 C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGGAGGAAGAGGAGG
R:
GGGATCAAGAGGTCGATATTGGC
Band lengths:
114-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development