HsaEX0053318 @ hg19
Exon Skipping
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:30282]
Coordinates
chr19:11504732-11508034:-
Coord C1 exon
chr19:11507920-11508034
Coord A exon
chr19:11505282-11505354
Coord C2 exon
chr19:11504732-11505196
Length
73 bp
Sequences
Splice sites
3' ss Seq
TCAAGTGAGAAGTCGTCCAGGTT
3' ss Score
-10.92
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CTGACCAGTCAGGACAAAGCCCCCAGCGTGGTCCGGCGAGCCTTGCAGAAGCACAATGTGCCCCAGCCCTGGGCCTGTGACTATCAGCTCTTTCAAGTCCTTCCTGGGGACCGGG
Seq A exon
GTTCCCAGTGACAGCAGAATGAGCTTGGCTTGGCAGTAGCTGCAGAGGGACCCATGGCTGTTCAGGTTCGCGG
Seq C2 exon
TGCTCCTGATTCCTGACAATGCCAACGTCTTCTATGCCATGAGTCCAGTCGCCCCCAGAGACTTCATGCTGCGGCGGAAAGAGGGGACCCGGAACACTCTGTCTGTCTCCCCAAGCTGAGGCAGCCCTGTCCTCTCCACAAGACACAAGTCCCACAGGCAAGCTTGCGACTCTTCTCCTGGAAAGCTGCCATCCCCCAGTAGAGGCCACTGTGCTGTGTATCCCAGGACCACCACCCAACTGTAGCCCATTGGACCCCATCTCTTTTTCTGACTCTGTTGGTACTAGATCCATATTCCAAAGACATCAGCCCATGGGTGGCTGGTGGAGAGCTCAATCCCATAAATGTAGAAAGAGGTGGGGCATGGATACGTCAAATCCCTCCCCAGAGAAATCTTATAAATGTTAGAGACGCATCAGAAGTGACAGATGCGGATGAAAATAGTGACCAGAGTTATGAAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-'22-25,'22-24,24-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=1.000 C2=0.359
Domain overlap (PFAM):
C1:
PF0078818=RA=FE(43.2=100)
A:
PF0078818=RA=PD(3.2=50.0)
C2:
PF0078818=RA=PD(31.8=70.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCCTGTGACTATCAGCT
R:
CTCAGCTTGGGGAGACAGACA
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)