HsaEX0054172 @ hg38
Exon Skipping
Gene
ENSG00000111880 | RNGTT
Description
RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:HGNC:10073]
Coordinates
chr6:88614272-88678419:-
Coord C1 exon
chr6:88678353-88678419
Coord A exon
chr6:88635706-88635779
Coord C2 exon
chr6:88614272-88614395
Length
74 bp
Sequences
Splice sites
3' ss Seq
CAGCCTTCCTTATACCACAGAAT
3' ss Score
6.66
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTTACTTCCTCAGAATGTTGGCCTCCTGTATGTTGGAGGTTATGAAAGACCCTTTGCACAAATCAAG
Seq A exon
AATTCAGAACAAGTTAAATCCACAGGAGACTACAACCAAACTGGCTTCCCTAAAAGAACTGCATCAACTCCAAG
Seq C2 exon
GTGACAAAAGAGCTGAAACAGTATGACAACAAAATTATAGAATGCAAATTTGAGAACAACAGCTGGGTCTTCATGAGACAGAGAACAGACAAAAGTTTTCCTAATGCCTACAACACTGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111880_MULTIEX3-4/5=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.006 A=0.880 C2=0.008
Domain overlap (PFAM):
C1:
PF0391910=mRNA_cap_C=FE(22.4=100)
A:
PF0391910=mRNA_cap_C=PD(24.1=52.0)
C2:
PF0391910=mRNA_cap_C=FE(41.8=100)
Main Inclusion Isoform:
ENST00000369485fB5999
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGCCTCCTGTATGTTGG
R:
CCATGGCAGTGTTGTAGGCAT
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development