HsaEX0054363 @ hg19
Exon Skipping
Gene
ENSG00000214279 | RP11-108K14.4
Description
Putative scavenger receptor cysteine-rich domain-containing protein LOC619207 [Source:UniProtKB/Swiss-Prot;Acc:Q4G0T1]
Coordinates
chr10:135304726-135311509:+
Coord C1 exon
chr10:135304726-135304823
Coord A exon
chr10:135306791-135306994
Coord C2 exon
chr10:135311333-135311509
Length
204 bp
Sequences
Splice sites
3' ss Seq
CCACTTTTTTTTTTTTTTAGAAA
3' ss Score
10.28
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GCTGAAGTACAGTGGTGTGATCTCGGCTCACGGCAACCTCTGTCTCCCAGGTTCAAGCAATTCTTATGCCTCAGCCTCCAGAGTAGCTAGGATTACAG
Seq A exon
AAAGAAAGAACAAAAAAGAGAAGGAGAGTAAATTCTTGTTTCCAAGTTAGACAAGAGAGTTATGATTAAATGCCACCTTGGGTCCACAAGTCTTCCATAAGAAAAACAATGAAAGGATTTCTGGATGATTCTATTATGACATCACAACTTGCAGCAGAGGCAGATGTAATGAGGCAATACTTGACATTGTTTTCAGGGCATTTG
Seq C2 exon
CTCGTGTCCTCGGTCTCTTGCCTTGGCACCTGGGTGGCTTGCCACCCACAGCAATTGTGACTTTGAAAGGCCATTCCACCGTTCTATCAATCCAGCTGCTTCAGGATGATGGGCAACGTGGTAAGACCAGTGAATTCCACGAACATGAGCCCACTGCTGCACTTCTATGGCCGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214279-'25-24,'25-23,26-24
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGTGGTGTGATCTCGGC
R:
TTACGGCCATAGAAGTGCAGC
Band lengths:
268-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)