HsaEX0054384 @ hg19
Exon Skipping
Gene
ENSG00000246089 | RP11-115C21.2
Description
NA
Coordinates
chr8:6261072-6264663:-
Coord C1 exon
chr8:6264603-6264663
Coord A exon
chr8:6263227-6263892
Coord C2 exon
chr8:6261072-6262641
Length
666 bp
Sequences
Splice sites
3' ss Seq
TAGCCTTCTATTTCCATTAGTGA
3' ss Score
3.71
5' ss Seq
AAGGTGATA
5' ss Score
4.18
Exon sequences
Seq C1 exon
CAGGACTCTGCCTGCCAGTGAGCCCCAGATCCAGGGACTAAGGCAGCAGGGGTGAAAGCAG
Seq A exon
TGACTTAGAAGCTACCCGGCGCCTCATCTGGGCTCACCTGAGCTGAGGATCAGGAAGGGGAGGGGGCACAGTCATTCCCTCGCGGACGCGGCGGGACCCCAGCGGACGGCTTTGTGCGGACTTTCGGCACCGTTATGCCCCCCTAGCCCGACACCACCTGGGGCTGGCGCGCCACGTTACTGTTCAGGGCCAGACGCACCGCCCTGCCTGCTCCGGGGAGCCGGACCTCCGATCCCGGGGATGGGGGACCCCGAGACCTCAGACCCAACGGAGGGGACTCTGATACCTCAGACCCCACGCGGGGACCCCGAGGCTTCAGACCCCCACAGGGTGACCCCGAGATCTCAGACCCCCGCAGGAGTACCTCCAGACCTCAAATCCCCAGTAAGGGAATGAAAGAGACTTCGGATCCCTGAGGCAGCAAATCCCTGTAGGGGCATCCCAGGACTCAGGTCACCGCGGGGTGAACCCAGACCTCACATTCAGGCAATCCCCAGGACGCCGATCGGCTGGCACTACCCACTGTCCCGGCCACCCCCCCTGGAGCTCAAAGGCTTGGCCCTCCAGCTGCTCCACCCTGCCGGCAACCAGGCTCAAACCTGCAGCCCGCGGATCCCCTGCCCCGGAAGCAACCAGATTCGCGGGAGGTTACCTGACTGATCCAAG
Seq C2 exon
GCAGTTTCTCACTCCGTTGCCCAGGCTGGAATGCAGTGGTGTAATCACAGCTCACTGCAGCCTCAACCTACTGGACTCAAAGGATAAGATCTGCTTTTAATTAATTTTTGTATACGGTATGGGATAGGGACCAAAGTTCATTTTTTTGCATGTATACATATCCAAATGTTCCAGCATCATTTATTAAAAAGTTATTTTTGTCTCTACTGCATTTCCTTTGTGCTTACATCAAAATCTGTGTTGCATATGTATGTGTTTCATTTTAGGCTTCCTATTGTGTTCCATTGAGCTATTTGTCTTTTTGCTGCCAGCACCATGCTGTTTTGATTATTGTAGCTATATAAATAAGTGATGAAATCAGATAGTTTATGTCCTACAACTTTATTTTTCAAGGTTATTTTGTATCTTCTAGATTCTTCAGATTTCCTTTTAAATCTTAGAGTCGACTTCTCATTTTGCACAAAAAAATACTGCTGGGATTTTGATTGAGATTGTGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000246089_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATCCAGGGACTAAGGCA
R:
GCTGGCAGCAAAAAGACAAAT
Band lengths:
349-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)