HsaEX0054683 @ hg38
Exon Skipping
Gene
ENSG00000230148 | HOXB-AS1
Description
HOXB cluster antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:43744]
Coordinates
chr17:48543551-48545564:+
Coord C1 exon
chr17:48543551-48543637
Coord A exon
chr17:48545121-48545357
Coord C2 exon
chr17:48545495-48545564
Length
237 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTCTATTAAACCCAGGAC
3' ss Score
5.39
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
CATGCGCCGGTTCTGAAACCAGACTTTGACCTGCCTTTCGGTGAGGTCCAGCAAGGCCGCGATCTCGACGCGGCGTGGCCGGCACAG
Seq A exon
GACTCCAGCGAAATTACAGGGAATTCGTGGTCACGGGACCGGCCTCCGCCAATCGCTCGTCTGGGCCTGGTGGAAAACAGAGAGCATTATTTGGTTTAATTGATTCAAAAACACCAGAGGACCACGACCAGGACACCATGAGCCCCCATTCCTACACCAGTGCCTCACATGCTCTCTCCCCAATGCCTCCGTTTCTCCAGAAAAGCTAGAGGAACCTTTTCCTCATCCCCTTCGAAG
Seq C2 exon
GAAAAGATGAGTGAGGATCTCCGCGTTGGAGGAAGAGGGAGTCGAAAGAGGCTTCCACTCTTTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230148_MULTIEX2-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCGCCGGTTCTGAAAC
R:
TTTTTCAAAGAGTGGAAGCCTCT
Band lengths:
156-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development