HsaEX0054685 @ hg19
Exon Skipping
Gene
ENSG00000230148 | RP11-357H14.12
Description
HOXB cluster antisense RNA 1 (non-protein coding) [Source:HGNC Symbol;Acc:43744]
Coordinates
chr17:46627251-46628610:+
Coord C1 exon
chr17:46627251-46627308
Coord A exon
chr17:46627702-46627764
Coord C2 exon
chr17:46628386-46628610
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCGCCCTTTCCCATCACAGGTG
3' ss Score
10.43
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GATAATTGAGGAAAAAAAAAAATCAAGATTTGGGGGGAATTACCTACAAAGATGTAAG
Seq A exon
GTGTGTTAATTTGGGCGCTTCTTGGATTCTACCCTGAGGAGGAGGCGCGTGGTGAGAGGAGAG
Seq C2 exon
CTCCACCAGCTGCGCGCTCGTGTACGCCGTCCGCGCCCGCTTGGACGCCGCCGACCCCGGGGGGCTCTTGTCCCCTCCCCCGCCGCCGCCGCCACCGCCCCCGCTGCCACCACTGCCTCCGCCGCCGCCGCCACCGCCGCCGCCACCACAGCCCTCTGCTGGATCCGAGGGGGAGGGGTGGGAAGGGGAGAAAATGAAATAAAAGATAATTACTGAACACGCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230148_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAATTACCTACAAAGATGT
R:
CGGGGGAGGGGACAAGAG
Band lengths:
108-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)