HsaEX0055088 @ hg38
Exon Skipping
Gene
ENSG00000237187 | NR2F1-AS1
Description
NR2F1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48622]
Coordinates
chr5:93409359-93553863:-
Coord C1 exon
chr5:93553761-93553863
Coord A exon
chr5:93544795-93544915
Coord C2 exon
chr5:93409359-93411509
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTGAGATG
3' ss Score
4.74
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
ATGTAAGCTGCCATTCACTGGGGAGCTTTGGCAATAGAATTGGCTAGATCAGGAAGCCTATGTCAACTATGGAACAACAACTTGCAGCTCATCTCTATTGATG
Seq A exon
ATGGAATCTCGCTATGTCACCAGGCTGGAGTGCAGTGGCGCAACCTCGGCTCAGCGCAACATCCGCCTCCCGGGTTCAAGTGATTCTCCTACCTCAGCCTCCTGAGTAGCTGGGATTACAG
Seq C2 exon
ATACACTGCCTCTAGGACTGGGACAGATAGCCACTGAGTACCTGCTTCAAATCACCCTGCACGTTTTCTCTTTGGAAAGATAAGCACTGGAGAACCATCTCGTTACCTTCAGCAGAAATGGAAACAAATCAAGACATTAAGAATGCCGCAGTGGACAGCAGTTATGCAAGGTTCAGCAGAGGAAGTTTTCAAGATGGTGTGCCTCACTAGCCAGAAATCAGAAAAGATCGAAGCTAGCCTTTTCATCTCAGCTGCTCCTTAAATCAGTGCAACCCCTCCAAATTAATGTGAATTGAAACTTGCATTGCTTTTCAACTTAATTGAATACTTACTATATGTGAACCACTGCACAAAATAGGGGAAGAAGATGTGGGAGACAAAGATGTGGAGCCTGTCTTCAATAAATTTACAGTTAGTTTCAGGGTACATTGTTTTTCTTCTGCTGTTAATTAGGTGTATCCCCAAGACAATAAATACATGAATGGAAAAGTATATTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237187_MULTIEX2-5/13=4-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCACTGGGGAGCTTTGG
R:
CTGTCCACTGCGGCATTCTTA
Band lengths:
251-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development