HsaEX0055089 @ hg19
Exon Skipping
Gene
ENSG00000237187 | RP11-65F13.2
Description
NA
Coordinates
chr5:92746995-92889569:-
Coord C1 exon
chr5:92889467-92889569
Coord A exon
chr5:92836663-92836866
Coord C2 exon
chr5:92746995-92747215
Length
204 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGTCATACATGCAGTTA
3' ss Score
5.52
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATGTAAGCTGCCATTCACTGGGGAGCTTTGGCAATAGAATTGGCTAGATCAGGAAGCCTATGTCAACTATGGAACAACAACTTGCAGCTCATCTCTATTGATG
Seq A exon
TTATTTCTTCCACTGACATCTTGAACCCCTCAGTCATCCATGAGGCTTGGAATCAACTTCTTCCAAACTCCTGCTCATGTTGATATTTTGATCTCCTTTTATGAAACATGGATGTTTTAATAGCATCTAGAATGAGAAATCTTTTCCAGAAGGCTTTCAATTGACTTTGCCCAGATCCATCAGAGGAATCGCTATCTATGACAG
Seq C2 exon
ATACACTGCCTCTAGGACTGGGACAGATAGCCACTGAGTACCTGCTTCAAATCACCCTGCACGTTTTCTCTTTGGAAAGATAAGCACTGGAGAACCATCTCGTTACCTTCAGCAGAAATGGAAACAAATCAAGACATTAAGAATGCCGCAGTGGACAGCAGTTATGCAAGGTTCAGCAGAGGAAGTTTTCAAGATGGTGTGCCTCACTAGCCAGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237187_MULTIEX1-4/9=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCACTGGGGAGCTTTGG
R:
GTGAGGCACACCATCTTGAAA
Band lengths:
300-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)