HsaEX0055280 @ hg19
Exon Skipping
Gene
ENSG00000213742 | RP4-694B14.5
Description
NA
Coordinates
chr20:25604681-25614806:+
Coord C1 exon
chr20:25604681-25604771
Coord A exon
chr20:25612794-25612924
Coord C2 exon
chr20:25614685-25614806
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTGCATTCTTCCATCTGCAGAAT
3' ss Score
9.84
5' ss Seq
AGGGCAAGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
ACCAGACCATCTCCCGGCGCGGGTGGAATTCCCGCGATCTGTCTCATTCCCTGCGCCGCCGAGAAAAGTGAGATCCCGCGAGACTCCCAGG
Seq A exon
AATGGCACCATTGTTGTGCGGATGCTGATGCCCAGCGTTGAGCCTGTCGTCTCCTATATTAGGGGAAGTTCTCCTGGCCCTTCCCAACTACCTCCCCTGTGCAAGTTTATTACAACTGAACGGCCTCAAGG
Seq C2 exon
ATGAAGTCTGGCTCTGTTGCCCAAGCTGGAGTGTGTTGGCACCATCTTGGTTCACTGCAACTTCCACCTCCCAGGCTCCAGTGATTCTCCTGCCTCAGCCTCAAGGGTAGCTGAGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742_MULTIEX1-1/7=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGACCATCTCCCGGC
R:
TAATCTCAGCTACCCTTGAGGCT
Band lengths:
210-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)