HsaEX0055281 @ hg38
Exon Skipping
Gene
ENSG00000213742 | ZNF337-AS1
Description
ZNF337 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40759]
Coordinates
chr20:25624059-25634827:+
Coord C1 exon
chr20:25624059-25624135
Coord A exon
chr20:25634049-25634170
Coord C2 exon
chr20:25634729-25634827
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTTTCTTTTAGATG
3' ss Score
12.54
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
CGGCGCGGGTGGAATTCCCGCGATCTGTCTCATTCCCTGCGCCGCCGAGAAAAGTGAGATCCCGCGAGACTCCCAGG
Seq A exon
ATGAAGTCTGGCTCTGTTGCCCAAGCTGGAGTGTGTTGGCACCATCTTGGTTCACTGCAACTTCCACCTCCCAGGCTCCAGTGATTCTCCTGCCTCAGCCTCAAGGGTAGCTGAGATTACAG
Seq C2 exon
GCTGGAGTGCAGTGGCATGATCTCACCTCACTGAGAACCTCCACCTCCAGGGTTCAAGTGATTCTGCTACCTCAACCTCCCAAATAGCTGGGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742_MULTIEX1-2/8=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGAATTCCCGCGATC
R:
CCAGCTATTTGGGAGGTTGAGG
Band lengths:
162-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development