HsaEX0055353 @ hg19
Exon Skipping
Gene
ENSG00000230124 | RP5-1180C10.2
Description
NA
Coordinates
chr1:180238330-180242533:-
Coord C1 exon
chr1:180242473-180242533
Coord A exon
chr1:180241748-180241827
Coord C2 exon
chr1:180238330-180239558
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTCCCCCTCCGCAGAAG
3' ss Score
12.01
5' ss Seq
GCAGTAATT
5' ss Score
0.62
Exon sequences
Seq C1 exon
GTGTTGACTTCAACAGCCCAGATGAGATTGACTTTCCCAATCCTGCCAAGAAGCCTAAAAG
Seq A exon
AAGACCTTCCACATTTGAGAACTCAGTACCTGAGAACAGTTATGATTCTTTGCAAACAACCTGAGGATTCATAACATGCA
Seq C2 exon
TGCCCCTGGAGGACACACGGAATAAAGTCAGCAGCTGGCCTGGGCAGCTCTGCTCTCTGTGCTTGCTCACCTGTGTGCCCCAGAAGGTGTCTCTGTGACATTCCTGACTTCCTCTCTGTCTTTTCTCCTTTCTTTCCATTCAAGAAAACCCTCTCTTAGAAACAATAGTAGCCAACATGTGTTAGCACCTACCATGTGCTGGTGTTGACTAAGGACTTTATATGCATTCGGTCCTCACAATCTACAAGGCTCTCCCTGGAGTCAGCAGACCTGGCTTCAGTGTTCTTGATGAGTGAGTGACTTGGGCCAGTAACTCACTTCCCCCTTGGAAGTCCAGAGGGCAACACGGCCTGCCCTGATCTTGGGAGGCACTAGAGGAATGAAGCAGCTGTGCAGCCAGGACATGTGTGTACACAGTGAGGGGGGACACACCCGTGCCTTCCCTTCTCCTCGGGCTGTTTTCTTCTCTCACGTGGCCACTGTCATCCCGGAACTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230124_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTCAACAGCCCAGATGA
R:
AGGAAGTCAGGAATGTCACAGAGA
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)