HsaEX0055517 @ hg19
Exon Skipping
Gene
ENSG00000148303 | RPL7A
Description
ribosomal protein L7a [Source:HGNC Symbol;Acc:10364]
Coordinates
chr9:136215777-136216907:+
Coord C1 exon
chr9:136215777-136215897
Coord A exon
chr9:136216242-136216466
Coord C2 exon
chr9:136216767-136216907
Length
225 bp
Sequences
Splice sites
3' ss Seq
ATCGTGCTCTTTGTTCTCAGGTG
3' ss Score
10.55
5' ss Seq
CAGGTTGCA
5' ss Score
-3.12
Exon sequences
Seq C1 exon
CCGAAAGGAAAGAAGGCCAAGGGAAAGAAGGTGGCTCCGGCCCCAGCTGTCGTGAAGAAGCAGGAGGCTAAGAAAGTGGTGAATCCCCTGTTTGAGAAAAGGCCTAAGAATTTTGGCATTG
Seq A exon
GTGTTTGTGTGCAGATGATGTAAAAGAATATTTGCTATCTGAGAGATGGTGATGACATTTTAAACCACCAAGATCGCTGATGCACCAACACCCTTCCTAGTGGCCCCAGACATGAACTTGACATGGAATTTGAGCCTCACTCGGTGTCACCCTTTACTTCTCAGGACAGGACATCCAGCCCAAAAGAGACCTCACCCGCTTTGTGAAATGGCCCCGCTATATCAG
Seq C2 exon
CTACTCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAAGCAAGAGAAGAAGCAGAGACTGTTGGCCCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTCCTTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148303-'4-6,'4-3,5-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.000 C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0124821=Ribosomal_L7Ae=PU(17.9=35.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGAAAGAAGGCCAAGGGA
R:
CTGCTCGAAGGACAGGTGGTC
Band lengths:
260-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)