HsaEX0055829 @ hg19
Exon Skipping
Gene
ENSG00000174891 | RSRC1
Description
arginine/serine-rich coiled-coil 1 [Source:HGNC Symbol;Acc:24152]
Coordinates
chr3:157920861-158015864:+
Coord C1 exon
chr3:157920861-157921034
Coord A exon
chr3:157943446-157943522
Coord C2 exon
chr3:158015828-158015864
Length
77 bp
Sequences
Splice sites
3' ss Seq
TATTTGGGACTTTCTCACAGATT
3' ss Score
6.31
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GTCCAGGTCAAGACCTCGTCTCCGTTCTCATAGTCGTAGCAGTGAAAGGTCCAGTCACAGAAGAACGCGTAGTCGGTCTCGGGATAGAGAACGACGTAAGGGCAGAGATAAAGAGAAAAGAGAAAAGGAGAAGGATAAAGGGAAGGACAAGGAATTACATAACATCAAACGTGG
Seq A exon
ATTTCACCAAAAGAATTGTGAGAGGAAAAAGAAACTTACATCTAACAGGAAGAGAAAAGTTTTAGGAAGACCAAATT
Seq C2 exon
GGAATCTGGAAACATCAAAGCTGGATTAGAACATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174891_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.963 C2=0.960
Domain overlap (PFAM):
C1:
PF154401=THRAP3_BCLAF1=FE(25.4=100)
A:
NO
C2:
PF154401=THRAP3_BCLAF1=FE(5.3=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTAGCAGTGAAAGGTCCA
R:
TCCAGCTTTGATGTTTCCAGA
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)