HsaEX0056025 @ hg38
Exon Skipping
Gene
ENSG00000186350 | RXRA
Description
retinoid X receptor alpha [Source:HGNC Symbol;Acc:HGNC:10477]
Coordinates
chr9:134373080-134401540:+
Coord C1 exon
chr9:134373080-134373180
Coord A exon
chr9:134374007-134374130
Coord C2 exon
chr9:134401396-134401540
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTGCCTGTTTGTAGCCC
3' ss Score
9.28
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TATGGATGAGGAAGCGGGTGCCCAGAGAGGGTGAGGAGCTGGGCTGGGCCACACAGCCAAGTGGCCACAGAGCTGGGGGTGGTCAGGAGCCATGCTTTCTG
Seq A exon
CCCTGGGTTCGACGGGGGAAGCAGTCGCCTGATGGGCAAGTGCTCTCTGAGTGGTGCATGAAGGTGGCTGTCCACGTGGCTGTCTGTGGTGTCGGTTAATCGTCACGGCTTCCGGGAGTTAAAG
Seq C2 exon
GCCCAGCCTAAAGCCGGGGTCAGGCGCAGAACAGTACCTTGGAGGGGAGCTCTGGGCACACCTGGCCCGTAGTGAGTGTGAATTTGCGTCAGAGAGCTGTCGAGACCCACGGGGCCACCTTGAGGGTGCCGGGGTCTTCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186350-'5-8,'5-6,8-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGATGAGGAAGCGGGTGC
R:
GAAGACCCCGGCACCCTC
Band lengths:
240-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development