HsaEX0056329 @ hg38
Exon Skipping
Gene
ENSG00000139697 | SBNO1
Description
strawberry notch homolog 1 [Source:HGNC Symbol;Acc:HGNC:22973]
Coordinates
chr12:123350310-123364843:-
Coord C1 exon
chr12:123364701-123364843
Coord A exon
chr12:123357809-123357852
Coord C2 exon
chr12:123350310-123350441
Length
44 bp
Sequences
Splice sites
3' ss Seq
TAAATATCTTCTTCCTACAGGTT
3' ss Score
10.98
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GCGTCAAGATGGCGGCGGGGAGGTAGGCAGAGCAGGACGCCGCTGCTGCCGCCGCCACCGCCGCCTCCGCTCCAGTCGCCTCTGGTCCTTCAAACTCACACCTCCCGGGAGGAGCTGTGCTGGCGCCGGGTCCCGCGGGGAAA
Seq A exon
GTTTTGCAGTGGGGGTTACTTTACCAAGCAAGGTCCTATGAAGG
Seq C2 exon
ATGGTGGAGCCAGGGCAAGATTTACTGCTTGCTGCTTTGAGTGAGAGTGGAATTAGTCCGAATGACCTCTTTGATATTGATGGTGGAGATGCAGGGCTTGCAACTCCAATGCCTACCCCGTCAGTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139697_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.623
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTCACACCTCCCGGGAG
R:
CCCTGCATCTCCACCATCAAT
Band lengths:
148-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development