HsaEX0056351 @ hg38
Exon Skipping
Gene
ENSG00000085365 | SCAMP1
Description
secretory carrier membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:10563]
Coordinates
chr5:78388837-78415618:+
Coord C1 exon
chr5:78388837-78388914
Coord A exon
chr5:78414699-78414763
Coord C2 exon
chr5:78415520-78415618
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCCCATTGATGGACTTGTAGATG
3' ss Score
3.99
5' ss Seq
TGGGTAATT
5' ss Score
6.19
Exon sequences
Seq C1 exon
GATCCATCAGTTACACAAGTGACAAGAAATGTTCCACCAGGACTTGATGAATATAATCCATTCTCGGATTCTAGAACA
Seq A exon
ATGTCTACTTCCTGATCTTGCAGCTTTCAGACACTACTGATCCTCACTGGCAAAGTGGAAGTTGG
Seq C2 exon
CCTCCACCAGGCGGTGTGAAGATGCCTAATGTACCCAATACACAACCAGCAATAATGAAACCAACAGAGGAACATCCAGCTTATACACAGATTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085365_MULTIEX1-3/9=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=1.000 C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000621999fB6125
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCAGTTACACAAGTGACA
R:
TGCAATCTGTGTATAAGCTGGATGT
Band lengths:
172-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development