HsaEX0056369 @ hg19
Exon Skipping
Gene
ENSG00000198794 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:30386]
Coordinates
chr15:75287901-75304187:+
Coord C1 exon
chr15:75287901-75288014
Coord A exon
chr15:75300002-75300069
Coord C2 exon
chr15:75304133-75304187
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTGCAACCTCTGCCTCCCAGGTT
3' ss Score
6.14
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCTCCCCGCCCCCAGCCCCGGAGCGGCTCGCGGCCGGCTCCGCGCCGCATCGCTCGGGTGCAGCGCAGCTCAGCGCAGCGCTGCGGCCTTTCGGCAGCCGAACGGCCGCGGCAG
Seq A exon
GTTCAATCAATTCTCCTGCTTCAACCTCCCGAGTAGCTGGAACTACAGGCACATGCCACCACGCCCAG
Seq C2 exon
TTCAGGACAAAGAGGTGTGGGCAGGCCACTGGGCCAGCTGGTAACATCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198794_MULTIEX1-2/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)