HsaEX0056475 @ hg19
Exon Skipping
Gene
ENSG00000006747 | SCIN
Description
scinderin [Source:HGNC Symbol;Acc:21695]
Coordinates
chr7:12596187-12617843:+
Coord C1 exon
chr7:12596187-12596356
Coord A exon
chr7:12610091-12610611
Coord C2 exon
chr7:12617689-12617843
Length
521 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTCGTCTATTGCTAGAGA
3' ss Score
5.55
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GAGGGAGCCGGCTCTGGCCTCGGCCAGCCCAGAAAGTGGCTCCCACAGTGCAGCCGTGGGCTGAAGGGCTCCTCAAGCGTGGCCAGAGTGGGCGCAGAGGCCGAGGAGGCGCCCAGAGCGAAAGAGGGTTGCCAGGGCTGCCAGCACGCTGTCACCTCTCAGTATAACTG
Seq A exon
AGAAAATGTCTTTCCTTGGAGGAGGCATTGGCACGAGTTACTATAAACTCCCTCTGAATCTCAAGACTTCTGGGACGCCGATTCCGCTCCTGGCCTGGGGCAAGGCGTGGGAGCTTGGAAGCCAGCGCTGCGCTCCCCGTGGGAAGCGATCGTCTCCTCTGTCAACTCGCGCCTGGGCACTTAGCCCCTCCCGTTTCAGGGCGCCGCCTCCCCGGATGGCAAACACTATAAAGTGGCGGCGAATAAGGTTCCTCCTGCTGCTCTCGGTTTAGTCCAAGATCAGCGATATCACGCGTCCCCCGGAGCATCGCGTGCAGGAGCCATGGCGCGGGAGCTATACCACGAAGAGTTCGCCCGGGCGGGCAAGCAGGCGGGGCTGCAGGTCTGGAGGATTGAGAAGCTGGAGCTGGTGCCCGTGCCCCAGAGCGCTCACGGCGACTTCTACGTCGGGGATGCCTACCTGGTGCTGCACACGGCCAAGACGAGCCGAGGCTTCACCTACCACCTGCACTTCTGGCTCG
Seq C2 exon
GAAAGGAGTGTTCCCAGGATGAAAGCACAGCTGCTGCCATCTTCACTGTTCAGATGGATGACTATTTGGGTGGCAAGCCAGTGCAGAATAGAGAACTTCAAGGATATGAGTCTAATGACTTTGTTAGCTATTTCAAAGGCGGTCTGAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006747_MULTIEX1-1/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
PF0062617=Gelsolin=PU(49.4=61.2)
C2:
PF0062617=Gelsolin=PD(49.4=78.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCCAGAAAGTGGCTC
R:
CTTGTATTTCAGACCGCCTTTGA
Band lengths:
302-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)