HsaEX0057042 @ hg19
Exon Skipping
Gene
ENSG00000075213 | SEMA3A
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A [Source:HGNC Symbol;Acc:10723]
Coordinates
chr7:84001140-84118498:-
Coord C1 exon
chr7:84118412-84118498
Coord A exon
chr7:84096713-84096839
Coord C2 exon
chr7:84001140-84001216
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTTAGAAG
3' ss Score
10.52
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
CACTCATTCTGTCTCCTGCTACCCTGTGAAAAGGTGCCTTCTGCCATTATTGTAAGCTTCCTGAGGCCTCCTCAGCCATGTGGAACT
Seq A exon
AAGGAGTCTCGCTCTGTCACCCAGGCTGGAATGCAGTGCAGTGGCGCATCCTCAGCTGTCTGCAATCTCCATCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAG
Seq C2 exon
AATATTTAAAAAAACCATCCATGGGACAGTCTAACATAACAAAGGGAATTATTCATCAAGAAGAGGCCCTTTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075213-'2-6,'2-3,3-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATTCTGTCTCCTGCTACCC
R:
CTGCTAAAGGGCCTCTTCTTGA
Band lengths:
162-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)