HsaEX0057060 @ hg38
Exon Skipping
Gene
ENSG00000075223 | SEMA3C
Description
semaphorin 3C [Source:HGNC Symbol;Acc:HGNC:10725]
Coordinates
chr7:80828585-80916819:-
Coord C1 exon
chr7:80916679-80916819
Coord A exon
chr7:80905829-80905916
Coord C2 exon
chr7:80828585-80828745
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATTCCATGACTCTTTTCCAGAGC
3' ss Score
6.98
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GTATTTTCCCTTGGATATTAACTTGCATATCTGAAGAAATGGCATTCCGGACAATTTGCGTGTTGGTTGGAGTATTTATTTGTTCTATCTGTGTGAAAGGATCTTCCCAGCCCCAAGCAAGAGTTTATTTAACATTTGATG
Seq A exon
AGCCTACCTTGTACAATGCTGTGTGCTACATCTGTGGGTACAAAAAGAAGTGTGGCGTGAATTTGGTCCTCAGCAACCACCTACTCTA
Seq C2 exon
AACTTCGAGAAACCAAGACCTCTGAATACTTCAGCCTTTCCCACCATCCTTTAGACTACAGGATTTTATTAATGGATGAAGATCAGGACCGGATATATGTGGGAAGCAAAGATCACATTCTTTCCCTGAATATTAACAATATAAGTCAAGAAGCTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075223_MULTIEX1-1/6=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0140314=Sema=PU(26.4=63.0)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTTGCGTGTTGGTTGGAGT
R:
TCCGGTCCTGATCTTCATCCA
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development