HsaEX0057105 @ hg19
Exon Skipping
Gene
ENSG00000187764 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:10732]
Coordinates
chr9:92070803-92112953:-
Coord C1 exon
chr9:92112834-92112953
Coord A exon
chr9:92090400-92090465
Coord C2 exon
chr9:92070803-92070868
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCTTTTCCATCAGGTG
3' ss Score
11.93
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CCCCGCCACCCCCTCCCCGGCCCGGCCGCCTCCCGCCGCTGCCGCCGCCGCCGCCGCCGCCATTCCTGGCGCCCGAACTCGCCCGGCCGGGAGCCGCCGCGGGCAGGACGCGCGCTGCAG
Seq A exon
GTGCAGTGTTGGAGTGAATGAATGATTGATGGGTGAACAAGTGAGAGAGTGGAGCTGGTCACAGAG
Seq C2 exon
ACTCTGCTAACACCAGATAGTGGAAAGAAACCATGTGCTGAAATGTTTGACGACACTGATGGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764-'0-4,'0-3,3-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCCTGGCGCCCGAA
R:
CAAACCATCAGTGTCGTCAAACA
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)