HsaEX0057110 @ hg38
Exon Skipping
Gene
ENSG00000187764 | SEMA4D
Description
semaphorin 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chr9:89455888-89498130:-
Coord C1 exon
chr9:89497919-89498130
Coord A exon
chr9:89474539-89474623
Coord C2 exon
chr9:89455888-89455953
Length
85 bp
Sequences
Splice sites
3' ss Seq
TAGCCCTTGTCCTCTTCCAGGGT
3' ss Score
8.23
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTGCGCGCCCGCCCCGCGCACTCCGTCCCCGCGCCGGCCTCAGCGCTCTCGCGCGCCGCAGCATCCCAGCCGCCGCTGCCGCCGCCGGGCCTCCCCGCCACCCCCTCCCCGGCCCGGCCGCCTCCCGCCGCTGCCGCCGCCGCCGCCGCCGCCATTCCTGGCGCCCGAACTCGCCCGGCCGGGAGCCGCCGCGGGCAGGACGCGCGCTGCAG
Seq A exon
GGTGGGCTTGAAAACGATAATGAAGTGTACACACTGAAAAAACAAAAATCACCCACGGGTTCTGAAGCTCAGTGGAGTTCTGCAG
Seq C2 exon
ACTCTGCTAACACCAGATAGTGGAAAGAAACCATGTGCTGAAATGTTTGACGACACTGATGGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764_MULTIEX1-2/9=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCCTGGCGCCCGAA
R:
CAAACCATCAGTGTCGTCAAACA
Band lengths:
127-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development