HsaEX0057111 @ hg19
Exon Skipping
Gene
ENSG00000187764 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:10732]
Coordinates
chr9:92032971-92070868:-
Coord C1 exon
chr9:92070803-92070868
Coord A exon
chr9:92033278-92033352
Coord C2 exon
chr9:92032971-92033033
Length
75 bp
Sequences
Splice sites
3' ss Seq
AGTACTTTTTTGGTTCACAGACT
3' ss Score
6.82
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
ACTCTGCTAACACCAGATAGTGGAAAGAAACCATGTGCTGAAATGTTTGACGACACTGATGGTTTG
Seq A exon
ACTCTGCTAACTGGAATGGCTTATTGTGCAAGAAAGTACACCTGGTCGGGTCCTGGGGCTCATCTCTAGCACCAG
Seq C2 exon
CAAAGATTTCTGAAGACGTCTTTCTAGAAATGACTGGAAAGTTTCAAGAGGCATAAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764_MULTIEX2-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGCTAACACCAGATAGTG
R:
GTATCTTATGCCTCTTGAAACTTTCC
Band lengths:
127-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)