HsaEX0057746 @ hg19
Exon Skipping
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:16073]
Coordinates
chr2:73276215-73285725:-
Coord C1 exon
chr2:73285657-73285725
Coord A exon
chr2:73280480-73280680
Coord C2 exon
chr2:73276215-73277028
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTCACTGTAATTTTTCTTAGGAA
3' ss Score
8.3
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
ACGTCCTTCTATGGCCGCTTCAGGCACTTCTTGGATATCATCGACCCTCGCACACTCTTTGTCACTGAG
Seq A exon
GAAGAAGGCTGTCTTTGTTCTAAGAATGCCTTGAACAAAGCTTCAGAGGAGGAGGTTGCCCTGCTTGACAGAGGAGAAGAATGGTGCATTTTGATCCTAAATGGAGAAAGGAGAGGGAAGGAAGAGGAGGAAAAAAACAGCGGGAAGGAGAGCATGATACTGAGATGAGCTGAAAGACCAATAAAGAAATGCCACAATGAG
Seq C2 exon
GCTCACAGCTGGAGGAAAATTTGCCTCAGGATGAATCACACCTTTGGGTCTCATCCATACCTAATTTAGAGGATTCTGGATGAGACTCTGACTTCAGACTTTTGAGTTGCTGCTGGAATGACTGACTTTTGGGGCTACTGAGATGGAATGAATATTTGTGAGAAGGACATAAATTTTGGGGGGCCAGGGTGAGATGCTATGGCTGAAATGTGTCCCATACAAAATTCAGGTGTTGAAACTTAATGGCAAATGTGATAGTATTAAGAGGTGGGATCTTTAAGAGGCAATTAGGCCATGAGGGTCCCTCCCTCATGAATGGAATTAAGGCCCTTGTAAAAGAGGCCTGGCCGGGTATGGTGGCTCACGGCTGTAATCCCAGCACTTTGGGAGGCTAAGGCTCAAGAATCACTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATGGCCAGACCCCAACTCTTAAAAAAATTTTTCAAAAATTAGCTGGGTGTCGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040-'6-18,'6-16,8-18
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.291 C2=NA
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(12.6=100)
A:
PF0382012=Mtc=PD(34.1=25.0)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCACACTCTTTGTCACTGA
R:
TGCCTCTTAAAGATCCCACCTCT
Band lengths:
308-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)