HsaEX0057987 @ hg19
Exon Skipping
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:30418]
Coordinates
chr4:152086741-152096847:-
Coord C1 exon
chr4:152095822-152096847
Coord A exon
chr4:152091781-152091943
Coord C2 exon
chr4:152086741-152086848
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGCTCCCTTTTGAATTTCAGACC
3' ss Score
8.3
5' ss Seq
TAAGTAAAA
5' ss Score
-1.5
Exon sequences
Seq C1 exon
TGGAGAGTGGGACTCTGGGACTGAGAACAGACTCAAGGTGACCTCCAAGGAAGGACTCACCCCATACCCTCCCCTGCAAGAAGCGGGAAGCATCCCAGTAACCAAACCTGAATTGCCAAAGAAACCAAACCCTGGCCTTATACGAAGTGTTAATCCTGAGATTCCGGGAAGAGGGCCCCTGGCTGAGAGCTCTGATAGTGGGAAGAAAGTGCCAACTCCTGCCCCGCGGCCTTTGCTGCTGAAGAAATCTGTTTCCTCAGAAAACCCCACCTACCCTTCAGCTCCACTGAAACCTGTCACTGTTCCTCCCCGACTCGCAGGGGCATCACAAGCCAAAGCATACAAGTCACTGGGAGAAGGGCCCCCAGCCAACCCCCCAGTTCCAGTTCTGCAGAGCAAGCCCTTGGTGGACATCGATCTCATCAGCTTTGATGATGATGTTTTGCCCACCCCATCGGGGAACCTGGCTGAAGAATCTGTTGGTTCAGAGATGGTTCTAG
Seq A exon
ACCATGTGGAGGCATTACCTTTAACAAGAGAGTTAATCAATAATCTTTTTAAAAGAGCTGAACATAAGCATAATTAGGCTGAAAGAAACTGGGAGAATTATCTCTTGTCGTCTTTGCCACTTCTGAAGAACTGCTTCCCCCAATGACCCTCAGATTCTGATAA
Seq C2 exon
ATCCCTTTCAGCTCCCTGCAAAAACAGAACCAATAAAAGAACGAGCAGTTCAACCAGCACCCACCAGGAAGCCCACTGTAATTCGAATTCCAGCCAAACCAGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686_MULTIEX3-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=0.280 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTACCCTTCAGCTCCACT
R:
TTTTGCAGGGAGCTGAAAGGG
Band lengths:
256-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)