HsaEX0059044 @ hg38
Exon Skipping
Gene
ENSG00000085491 | SLC25A24
Description
solute carrier family 25 member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
Coordinates
chr1:108185828-108200358:-
Coord C1 exon
chr1:108199956-108200358
Coord A exon
chr1:108195432-108195480
Coord C2 exon
chr1:108185828-108185954
Length
49 bp
Sequences
Splice sites
3' ss Seq
GATGTTATCCTTCTCTGCAGAAA
3' ss Score
9.78
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
AGCGGCGGGACGGCCACACCCTGCGCTCCGCGCGGGCTCGGGTGGGGTCTCCGCTCCTGCGCCCTGCGCCCTGCGCGCCGCAGCCGCAACCCCGACGGCGCCCCAAACGCTGTTGCGCCGCGCGCCCCGCCCAGCCCGGCCTCGCGCTGGTCCCGGTCTCGCCCCGCAGCCCTCGATCTCCCGTGACTTCCTCGGCCAGGCCGCCTGCGCCTCTGGGACCATGTTGCGCTGGCTGCGGGACTTCGTGCTGCCCACCGCGGCCTGCCAGGACGCGGAGCAGCCGACGCGCTACGAGACCCTCTTCCAGGCACTGGACCGCAATGGGGACGGAGTGGTGGACATCGGCGAGCTGCAGGAGGGGCTCAGGAACCTGGGCATCCCTCTGGGCCAGGACGCCGAGGAG
Seq A exon
AAATAAAGTGTCTGAAAGAATGAAAAAAATGGAAGAATTCTTTAGTAAG
Seq C2 exon
AAAATTTTTACTACTGGAGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAGTACCTTAAAGACCATGAGAAGAAAATGAAATTGGCATTTAAGAGTTTAGACAAAAATAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085491_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=1.000 C2=0.008
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(65.7=75.4)
A:
NO
C2:
PF134991=EF-hand_7=PD(36.1=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
Main Inclusion Isoform:
ENST00000565488fB6415
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCCTCTTCCAGGCACT
R:
CCCATCTTTGTTGACATCTCCAGT
Band lengths:
147-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development