HsaEX0059127 @ hg19
Exon Skipping
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25, member 41 [Source:HGNC Symbol;Acc:28533]
Coordinates
chr19:6430020-6432215:-
Coord C1 exon
chr19:6432060-6432215
Coord A exon
chr19:6430532-6430629
Coord C2 exon
chr19:6430020-6430172
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACACTAGCCTGTAATCCCAGCTA
3' ss Score
-1.08
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
Exon sequences
Seq C1 exon
GTACTGGACACAGGAGAGCAGCTGATGGTCCCCGTGGAAGTCCTGGAAGTGGATAACAAGGAGGCCTTGTGGAAGTTTCTACTCTCAGGAGCTATGGCCGGGGCGGTGTCTCGCACGGGCACGGCACCTCTGGACAGAGCCAAGGTGTACATGCAG
Seq A exon
CTACTCGGGAGGCTGAGGCAGGAGAATCGCCTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCCCCCGACCGCACTCCAGCCTGGGCGACAGA
Seq C2 exon
GTCTACTCCTCCAAGACGAACTTCACCAACCTGCTGGGGGGGCTACAGAGCATGGTCCAGGAGGGCGGCTTCCGCTCCCTGTGGCGGGGCAACGGCATCAACGTGCTCAAGATTGCTCCTGAGTATGCCATCAAGTTCTCCGTATTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=0.697 C2=0.049
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.5=63.5)
A:
PF0015322=Mito_carr=FE(45.7=100)
C2:
PF0015322=Mito_carr=FE(53.8=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGAGCAGCTGATGGT
R:
GCAGGTTGGTGAAGTTCGTCT
Band lengths:
181-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)