HsaEX0059377 @ hg38
Exon Skipping
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr5:177388277-177393763:+
Coord C1 exon
chr5:177388277-177388372
Coord A exon
chr5:177389639-177390484
Coord C2 exon
chr5:177393694-177393763
Length
846 bp
Sequences
Splice sites
3' ss Seq
CAAGCCTCTCTACTTCATAGCAA
3' ss Score
4.25
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CTGGACGAGTCTGTGATAACCAGCATTGCCACTGGTGATGAGTCCCTGAGGAACCACAGTCTCATCCAGATCTGGTGCCACCCAGACTCCTTACAG
Seq A exon
CAAAATCTGGAAGGGAGAGAAATCACACACTTTGATCTTCGCAAAAAGCAAGCCATGGAAGACAGCTCTGTTCCTCACTGCCCCTGAGCTCCCTGCCGGCCACCTACTGCAGCTTCCGGCAGATCTCAACCAGCAGCCTCCACGTCCTCACTTGAAGTCATCCTCACCCAGGTTCACTCTGGGGAGGCCGCCCTTGGGCCTTTCTCTACGGCTGCAGCTGACACTTGTCCAGCTGGTTTCTCTTCCTCACTCTACCAGGAAATGCTTTCCTTAAACGCTTTCTGCAGGGCAGGGTCTCATTTCCTCGGCTTGGAGAGTAGCTGGTGGGTGGGACCCAAGCTCTCACTTTCATCCCCTTTCTGGGACAGCGCCCCGAAGGAGTGTGACTCACACAGCAGTGGATGTGCTTGGTCTTGCAAAGTGTGAAGTGCGTCCTGGCTCTTCCTGCCCAAAGACGGGCCACAGAGTCTCCCCGTGCTCCCTTCCAACCTGTTCCCATTGACGCCAACTTTCACCATGCTGGACCTGAACCAGCCCGAAACAGTCTCCAGGGAAGCTATGCACCAGGGAGAGGAGGCAAGTCCAAGGCCTACCAGATGGGGAAAGCAGCAGCAGCGGCAGTTGAGTGATCAGACACTTGAGTCTCCCGGGACCCTGACACCGTCCTGGGAATCACCTTCTTATGTGGCCACACTGTGGACTGTCAACTATACCTGCCTGGATTAAACAAGCATCTTTTGAGGACTTGCAACCTGGGAGGCAGGGATTATCACGTCCCCATTTTACAGACGAGGAGCACTGAGCCCCAGAGAAGTGCAGTGGCTTGCCCAAGTCCATGTAATTGAG
Seq C2 exon
GCTCCCACCTCCATGTCCAGAGCAGAGGCCAACTCCAGCCAGACCCTTGGAAATGCCACCATGGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000324417fB6448
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development